aslprep.utils.plotting module

Plotting functions and classes.

class ASLPlot(func_file, mask_file=None, data=None, confounds_file=None, seg_file=None, tr=None, usecols=None, units=None, vlines=None, spikes_files=None)

Bases: object

Generates the ASL Summary Plot.

confounds

func_file

mask_data

plot(figure=None)

Generate the plot.

seg_data

spikes

tr

class CBFPlot(cbf, ref_vol, label, outfile, vmax)

Bases: object

Generate the CBF Summary Plot.

This plot restricts CBF values to -20 (if there are negative values) or 0 (if not) to 100.

cbf

label

outfile

plot()

Generate the plot.

This plot restricts CBF values to -20 (if there are negative values) or 0 (if not) to 100.

ref_vol

vmax

class CBFtsPlot(cbf_file, confounds_file=None, seg_file=None, score_outlier_index=None, tr=None, units=None, vlines=None)

Bases: object

Generate the CBF time series Summary Plot.

cbf_file

fd_file

plot(figure=None)

Generate the plot.

seg_data

tr

confoundplotx(tseries, gs_ts, gs_dist=None, name=None, units=None, tr=None, hide_x=True, color='b', cutoff=None, ylims=None)

Generate a modified version of confoundplot from niworkflows.

TODO: Figure out what was modified and why. TODO: See if I can use the regular confoundplot instead.

plot_stat_map(cbf, ref_vol, plot_params=None, order=('z', 'x', 'y'), vmax=100, estimate_brightness=False, label=None, compress='auto')

Plot statistical map.