aslprep.utils.atlas module
Functions for working with atlases.
- get_atlas_names(subset)[source]
Get a list of atlases to be used for parcellation and functional connectivity analyses.
The actual list of files for the atlases is loaded from a different function.
NOTE: This is a Node function.
- Parameters:
subset = {“all”, “subcortical”, “cortical”} – Description of the subset of atlases to collect. “cortical” atlases are ones with the cortex included, so they can be used for cortical-only data (e.g., cortical thickness). “subcortical” atlases are ones with only subcortical regions. “all” combines both lists of atlases.
- Returns:
List of atlases.
- Return type:
- get_atlas_nifti(atlas_name)[source]
Select atlas by name from aslprep/data using aslprep.data.load.
All atlases are in MNI space.
NOTE: This is a Node function.
- Parameters:
atlas_name ({“4S156Parcels”, “4S256Parcels”, “4S356Parcels”, “4S456Parcels”, “4S556Parcels”, “4S656Parcels”, “4S756Parcels”, “4S856Parcels”, “4S956Parcels”, “4S1056Parcels”, “Glasser”, “Gordon”, “Tian”, “HCP”}) – The name of the NIFTI atlas to fetch.
- Returns: